Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1249

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9616 and 9617 are separated by 526 nucleotides mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747,049 to 750,301 9616 mRNA_1249: 9617 - Hypothetical Protein, at 750,828 to 752,844 9617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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749,881 + 9616 mRNA_1248 0.87 +2.3
749,913 - 9616 mRNA_1248 0.88 -0.3
749,932 - 9616 mRNA_1248 0.89 +0.4
749,933 + 9616 mRNA_1248 0.89 +1.1
750,023 - -0.4
750,056 - +1.6
750,125 - -1.2
750,154 - +0.1
750,158 - +0.1
750,184 - +0.8
750,204 - +0.2
750,213 - +0.0
750,217 - +0.8
750,220 + +2.0
750,226 - +0.1
750,328 - -0.7
750,469 + +0.4
750,496 - +0.0
750,506 + -0.2
750,559 + +0.0
750,570 + +1.5
750,660 + +0.4
750,690 + +0.9
750,824 + +0.1
750,838 - -0.4
751,275 + 9617 mRNA_1249 0.22 -0.5
751,532 + 9617 mRNA_1249 0.35 -0.5
751,536 - 9617 mRNA_1249 0.35 -0.2
751,690 + 9617 mRNA_1249 0.43 +0.2
752,394 + 9617 mRNA_1249 0.78 +0.9
752,519 + 9617 mRNA_1249 0.84 -0.8
752,531 + 9617 mRNA_1249 0.84 +0.6
752,668 + +0.1
752,732 + +0.4
752,837 - -0.6
752,844 + -0.6
752,851 - +0.3
752,973 - -0.0
752,973 - +0.5
752,977 + +0.9
752,984 + +1.7
753,002 + +1.6
753,114 - +1.7
753,115 - -0.8
753,117 - +0.3
753,122 - +0.3
753,122 - +0.6
753,126 + +1.8
753,138 - +3.1
753,138 - +0.7
753,145 - +0.1
753,150 - +2.2
753,264 + -1.6
753,269 + +0.1
753,393 + -1.0
753,406 - -1.0
753,416 + +0.3
753,426 + +0.4
753,438 + +0.8
753,450 + +0.6
753,719 - +0.1

Or see this region's nucleotide sequence