Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1265

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9632 and 9633 are separated by 83 nucleotides9633 and 9634 are separated by 224 nucleotides mRNA_1264: 9632 - HMMPfam-Mitochondrial ribosomal protein subunit L20-PF12824, at 783,698 to 784,459 9632 mRNA_1265: 9633 - K14861 URB1 nucleolar pre-ribosomal-associated protein 1, at 784,543 to 790,877 9633 mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791,102 to 792,635 9634

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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783,615 - +0.4
783,625 - +1.0
783,709 - +0.6
784,354 + 9632 mRNA_1264 0.86 +0.6
784,355 + 9632 mRNA_1264 0.86 +1.9
784,358 - 9632 mRNA_1264 0.87 +2.0
784,358 + 9632 mRNA_1264 0.87 +0.1
784,359 - 9632 mRNA_1264 0.87 -0.6
784,363 + 9632 mRNA_1264 0.87 -0.5
784,372 - 9632 mRNA_1264 0.88 +0.3
784,381 + 9632 mRNA_1264 0.90 -0.8
784,415 - +1.0
784,489 - -2.2
784,526 + +1.0
786,124 - 9633 mRNA_1265 0.25 +1.4
787,944 - 9633 mRNA_1265 0.54 +1.8
791,013 + -0.1
791,024 - -1.1
791,024 - +0.4
791,025 + +0.8
791,027 - +0.2
791,041 + -0.5
791,044 - +0.5
791,045 - +0.6
791,177 + -0.3
791,703 - 9634 mRNA_1266 0.39 -1.0
791,740 + 9634 mRNA_1266 0.42 +0.6

Or see this region's nucleotide sequence