Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1285

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9652 and 9653 are separated by 713 nucleotides9653 and 9654 are separated by 244 nucleotides mRNA_1284: 9652 - K12897 TRA2 transformer-2 protein, at 832,225 to 833,165 9652 mRNA_1285: 9653 - Interpro Ribosomal protein 60S L18 and 50S L18e 0, at 833,879 to 834,376 9653 mRNA_1286: 9654 - HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735, at 834,621 to 836,012 9654

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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833,218 + +1.4
833,511 + -0.3
833,771 + -0.5
833,803 - +1.1
833,936 - 9653 mRNA_1285 0.11 -0.6
833,994 - 9653 mRNA_1285 0.23 -0.4
834,255 + 9653 mRNA_1285 0.76 +1.8
834,635 - +0.3
834,672 - -0.6
834,682 + +1.1
834,838 + 9654 mRNA_1286 0.16 +0.8
834,981 + 9654 mRNA_1286 0.26 +1.5
834,986 - 9654 mRNA_1286 0.26 +1.0
835,095 - 9654 mRNA_1286 0.34 +0.5

Or see this region's nucleotide sequence