Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1296

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9663 and 9664 are separated by 339 nucleotides9664 and 9665 are separated by 521 nucleotides mRNA_1295: 9663 - Hypothetical Protein, at 855,007 to 856,078 9663 mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856,418 to 857,945 9664 mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858,467 to 858,877 9665

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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855,552 + 9663 mRNA_1295 0.51 -0.2
855,718 + 9663 mRNA_1295 0.66 -0.1
855,979 - +0.5
855,981 + -0.0
855,986 + +0.8
856,141 - +0.6
856,152 + +0.4
856,166 + -0.3
856,293 + +0.9
856,402 + -0.7
856,428 + -0.8
856,430 - +0.3
858,011 - +1.6
858,017 - -1.2
858,035 + +0.4
858,039 - +0.1
858,057 - +0.3
858,064 + +0.1
858,078 - -0.2
858,080 - +0.2
858,081 + -0.6
858,089 + -0.4
858,097 + +0.3
858,102 - -0.5
858,107 - +1.4
858,108 + -1.1
858,108 + +0.4
858,112 - -0.4
858,152 + +0.2
858,202 + -0.2
858,655 + 9665 mRNA_1297 0.46 -1.2
858,790 + 9665 mRNA_1297 0.79 +0.3
858,931 - +1.1
858,934 + +0.0

Or see this region's nucleotide sequence