Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1298

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9665 and 9666 are separated by 302 nucleotides9666 and 9667 are separated by 510 nucleotides mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858,467 to 858,877 9665 mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859,180 to 859,998 9666 mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860,509 to 862,713 9667

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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858,202 + -0.2
858,655 + 9665 mRNA_1297 0.46 -1.2
858,790 + 9665 mRNA_1297 0.79 +0.3
858,931 - +1.1
858,934 + +0.0
858,968 + +0.2
858,984 - -0.4
859,110 - -0.1
859,137 - +0.4
859,245 + -0.2
859,415 - 9666 mRNA_1298 0.29 +1.3
859,421 - 9666 mRNA_1298 0.29 -0.3
859,568 - 9666 mRNA_1298 0.47 -1.0
859,600 - 9666 mRNA_1298 0.51 +0.8
859,615 + 9666 mRNA_1298 0.53 +0.5
859,761 - 9666 mRNA_1298 0.71 -1.2
859,763 + 9666 mRNA_1298 0.71 -1.1
859,764 - 9666 mRNA_1298 0.71 +1.5
859,769 + 9666 mRNA_1298 0.72 +1.4
859,769 - 9666 mRNA_1298 0.72 -0.4
859,779 + 9666 mRNA_1298 0.73 -0.5
859,784 - 9666 mRNA_1298 0.74 +1.4
859,794 + 9666 mRNA_1298 0.75 -1.6
859,804 + 9666 mRNA_1298 0.76 +1.6
859,821 + 9666 mRNA_1298 0.78 +0.9
859,845 + 9666 mRNA_1298 0.81 +0.5
859,846 - 9666 mRNA_1298 0.81 +1.0
859,851 - 9666 mRNA_1298 0.82 -1.1
859,854 - 9666 mRNA_1298 0.82 +0.3
859,856 + 9666 mRNA_1298 0.83 -0.6
859,857 - 9666 mRNA_1298 0.83 +0.2
859,860 + 9666 mRNA_1298 0.83 -0.9
859,862 + 9666 mRNA_1298 0.83 -1.5
859,865 - 9666 mRNA_1298 0.84 +1.6
859,867 + 9666 mRNA_1298 0.84 -0.1
859,870 - 9666 mRNA_1298 0.84 -0.1
859,872 + 9666 mRNA_1298 0.84 -0.4
859,872 + 9666 mRNA_1298 0.84 -1.0
859,882 + 9666 mRNA_1298 0.86 +0.4
859,892 - 9666 mRNA_1298 0.87 +0.5
859,912 + 9666 mRNA_1298 0.89 -0.2
859,916 + 9666 mRNA_1298 0.90 +1.3
859,925 - -0.9
859,974 + -0.3
859,994 - +0.3
860,062 - +0.9
860,074 + +0.8
860,097 - +0.7
860,136 + -0.6
860,145 - +0.1
860,204 - +0.2
860,228 - +1.5
860,237 - +2.0
860,264 - -0.5
860,270 + -0.3
860,279 - +1.4
860,279 + +0.4
860,290 + +0.2
860,300 - +2.3
860,395 + +0.9
860,407 + -0.6
860,415 - +0.4

Or see this region's nucleotide sequence