Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1320

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9688 and 9689 are separated by 872 nucleotides mRNA_1320: 9688 - K00384 trxB thioredoxin reductase (NADPH), at 921,443 to 923,748 9688 mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924,621 to 927,018 9689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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920,784 + +0.4
921,063 + -1.0
923,535 + +2.4
923,550 + +2.1
923,664 - -0.4
923,669 + +0.8
923,681 - -0.3
923,684 + +0.7
923,688 + -0.1
923,691 - -0.2
923,699 - -0.4
923,699 - +0.4
923,704 - +1.3
923,705 - +1.3
923,709 + -0.5
923,709 + +1.5
923,710 + +2.2
923,724 + +0.7
923,817 + +0.4
923,916 - +0.8
923,925 - +0.4
923,930 - +0.1
923,939 - -0.5
923,943 + -0.0
923,950 + +0.8
923,955 + +0.3
923,963 + -0.1
923,964 + +1.0
923,970 - +0.5
923,970 - +2.8
923,975 + +1.2
923,979 - -0.4
924,100 + +0.0
924,163 + -0.1
924,251 - +1.1

Or see this region's nucleotide sequence