Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1321

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9688 and 9689 are separated by 872 nucleotides9689 and 9690 are separated by 403 nucleotides mRNA_1320: 9688 - K00384 trxB thioredoxin reductase (NADPH), at 921,443 to 923,748 9688 mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924,621 to 927,018 9689 mRNA_1322: 9690 - K11662 ACTR6, ARP6 actin-related protein 6, at 927,422 to 929,610 9690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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923,664 - -0.4
923,669 + +0.8
923,681 - -0.3
923,684 + +0.7
923,688 + -0.1
923,691 - -0.2
923,699 - -0.4
923,699 - +0.4
923,704 - +1.3
923,705 - +1.3
923,709 + -0.5
923,709 + +1.5
923,710 + +2.2
923,724 + +0.7
923,817 + +0.4
923,916 - +0.8
923,925 - +0.4
923,930 - +0.1
923,939 - -0.5
923,943 + -0.0
923,950 + +0.8
923,955 + +0.3
923,963 + -0.1
923,964 + +1.0
923,970 - +0.5
923,970 - +2.8
923,975 + +1.2
923,979 - -0.4
924,100 + +0.0
924,163 + -0.1
924,251 - +1.1
926,269 - 9689 mRNA_1321 0.69 +0.5
927,097 - -0.4
927,241 - +0.9
927,277 + -0.7
927,319 - -0.8

Or see this region's nucleotide sequence