Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1324

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9691 and 9692 are separated by 526 nucleotides mRNA_1323: 9691 - Hypothetical Protein, at 929,685 to 931,310 9691 mRNA_1324: 9692 - Hypothetical Protein, at 931,837 to 933,855 9692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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930,867 - 9691 mRNA_1323 0.73 +0.6
930,909 - 9691 mRNA_1323 0.75 -1.5
930,911 - 9691 mRNA_1323 0.75 +0.4
931,056 - 9691 mRNA_1323 0.84 -0.5
931,105 + 9691 mRNA_1323 0.87 +1.4
931,196 - +1.5
931,535 + +1.0
931,627 - -0.9
931,629 + +0.9
931,682 + +0.6
931,708 + -0.0
931,801 + +1.9
931,929 - +2.2
931,935 + +1.8
931,942 - +1.3
932,059 + 9692 mRNA_1324 0.11 +2.7
932,348 - 9692 mRNA_1324 0.25 -0.0
932,355 + 9692 mRNA_1324 0.26 -0.6
932,441 + 9692 mRNA_1324 0.30 -0.4
932,441 - 9692 mRNA_1324 0.30 +2.1
932,484 - 9692 mRNA_1324 0.32 -0.5
932,489 - 9692 mRNA_1324 0.32 +1.6
932,526 - 9692 mRNA_1324 0.34 +1.6
932,871 + 9692 mRNA_1324 0.51 +1.2
933,005 + 9692 mRNA_1324 0.58 +0.6
933,025 - 9692 mRNA_1324 0.59 -0.3
933,070 + 9692 mRNA_1324 0.61 -1.0
933,248 - 9692 mRNA_1324 0.70 -1.4
933,344 + 9692 mRNA_1324 0.75 -1.5
933,396 + 9692 mRNA_1324 0.77 +0.9
933,530 - 9692 mRNA_1324 0.84 +0.4
933,554 + 9692 mRNA_1324 0.85 -1.0
933,843 + +1.0
933,877 - +0.7
933,911 + +0.0
933,927 + -0.5
933,938 - +0.1
933,942 - +0.7
933,984 + +0.5
933,990 - -0.5
934,003 - +0.0
934,284 + +0.3
934,292 - +0.7
934,322 + +0.5
934,378 - +0.7
934,416 - +0.0
934,417 + -0.4
934,701 + -0.4
934,734 + +0.2
934,811 - -0.8

Or see this region's nucleotide sequence