Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9699 and 9700 are separated by 562 nucleotides mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,354 - -0.4
15,355 - +0.9
15,359 + +1.6
15,512 - +0.0
15,519 + -0.6
15,580 + -1.2
15,637 + -0.1
15,648 + +0.2
15,654 - -2.0
15,656 - -0.3
15,657 + +1.5
15,663 - +0.8
15,665 - +0.4
15,665 + +0.3
15,667 + +1.1
15,671 + +1.4
15,683 + -0.8
15,684 + +0.8
15,699 + +1.1
15,713 + -0.0
15,792 - +0.7
15,857 + +0.7
15,996 - +1.4
16,078 + -0.8
16,087 - +0.2
16,089 + -1.7
16,122 + 9700 mRNA_1332 0.10 -1.2
16,280 - 9700 mRNA_1332 0.15 +1.2
16,363 - 9700 mRNA_1332 0.17 -1.1
16,505 - 9700 mRNA_1332 0.22 +1.1
16,505 - 9700 mRNA_1332 0.22 -0.2
16,546 + 9700 mRNA_1332 0.23 +0.5
16,581 + 9700 mRNA_1332 0.24 +0.9
16,581 + 9700 mRNA_1332 0.24 +1.1
16,899 + 9700 mRNA_1332 0.34 -0.7
16,980 - 9700 mRNA_1332 0.36 -0.1
17,024 - 9700 mRNA_1332 0.37 +0.2
17,288 - 9700 mRNA_1332 0.45 +0.4
17,370 - 9700 mRNA_1332 0.48 +0.2
17,548 + 9700 mRNA_1332 0.53 +0.1
17,574 - 9700 mRNA_1332 0.54 +1.5
17,841 - 9700 mRNA_1332 0.62 +1.4
17,865 + 9700 mRNA_1332 0.63 -0.3
17,957 + 9700 mRNA_1332 0.65 -0.2
18,002 + 9700 mRNA_1332 0.67 +0.8
18,511 - 9700 mRNA_1332 0.82 -0.7
18,550 - 9700 mRNA_1332 0.83 -0.0
18,573 + 9700 mRNA_1332 0.84 +0.0
18,882 - +1.0
19,111 - +0.4
19,235 - +0.2
19,262 - -0.5
19,291 + +1.2
19,296 - +0.8
19,304 - +0.6
19,406 - -1.0
19,412 - +2.1
19,414 - +1.0
19,420 - -0.2
19,422 + -0.0
19,434 - +0.2
19,442 + -1.7
19,452 + -0.4
19,456 - +0.1
19,461 - +0.9
19,480 - +0.9
19,494 + -0.4
19,495 - +0.2
19,496 + -0.1
19,596 - +2.0
19,625 + +0.1
19,626 + +0.3
19,708 - +0.6
19,769 - -1.2
19,769 - +1.7
19,856 + -0.6
19,859 + +0.3
19,899 - +1.2

Or see this region's nucleotide sequence