Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1363

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9731 and 9732 are separated by 779 nucleotides mRNA_1363: 9731 - K11147 DHRS4 dehydrogenase/reductase SDR family member 4, at 98,069 to 99,768 9731 mRNA_1364: 9732 - SUPERFAMILY--SSF48452, at 100,548 to 102,445 9732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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97,398 - +0.5
97,433 + +0.1
97,563 + +0.5
97,720 + +1.3
97,730 - -2.0
97,840 - +2.1
97,848 + +1.4
97,849 - -0.8
97,854 - -0.9
97,859 + +1.0
97,860 - +0.6
97,873 - -1.5
97,873 + +0.3
97,876 - -0.6
97,877 + +0.6
97,884 + +0.9
97,886 + +1.3
97,888 + +0.0
97,996 - -0.6
98,001 + -0.1
98,002 - +0.7
98,002 + -0.7
98,005 + +1.3
98,006 - -0.3
98,007 + +0.6
98,008 + -0.1
98,166 + +1.0
98,325 + 9731 mRNA_1363 0.15 +1.7
98,349 - 9731 mRNA_1363 0.16 -0.7
98,460 + 9731 mRNA_1363 0.23 +0.5
98,492 + 9731 mRNA_1363 0.25 -0.0
98,623 - 9731 mRNA_1363 0.33 +0.4
98,706 + 9731 mRNA_1363 0.37 +2.1
98,761 - 9731 mRNA_1363 0.41 +0.7
98,915 + 9731 mRNA_1363 0.50 +0.2
99,047 - 9731 mRNA_1363 0.58 +0.6
99,303 + 9731 mRNA_1363 0.73 +0.9
99,605 + -0.5
99,769 - +1.9
99,905 - +0.4
99,910 + +0.0
99,921 + +0.6
99,927 + +1.4
99,929 + +0.3
99,956 - +0.8
100,052 + +0.8
100,211 - -0.7
100,243 - +0.9
100,386 + -0.3

Or see this region's nucleotide sequence