Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1376

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9743 and 9744 are separated by 329 nucleotides9744 and 9745 are separated by 377 nucleotides mRNA_1375: 9743 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 123,978 to 126,769 9743 mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127,099 to 128,886 9744 mRNA_1377: 9745 - Hypothetical Protein, at 129,264 to 129,958 9745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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126,483 + 9743 mRNA_1375 0.90 +0.2
126,493 + -0.5
126,605 - +0.4
126,623 + +0.9
126,915 - +0.4
127,262 - +1.4
127,337 + 9744 mRNA_1376 0.13 -0.2
127,528 + 9744 mRNA_1376 0.24 -0.7
127,765 + 9744 mRNA_1376 0.37 -0.3
127,806 - 9744 mRNA_1376 0.40 -0.7
127,816 - 9744 mRNA_1376 0.40 -0.3
128,043 - 9744 mRNA_1376 0.53 +1.0
128,354 + 9744 mRNA_1376 0.70 +0.9
128,510 - 9744 mRNA_1376 0.79 +1.0
128,804 - +1.0
128,965 + +0.6
129,101 + +1.1
129,109 - +0.2
129,110 + +0.1
129,118 + +0.4
129,119 - +0.3
129,127 + +1.6
129,135 + -0.8
129,160 + +1.1
129,394 + 9745 mRNA_1377 0.19 +0.3
129,578 + 9745 mRNA_1377 0.45 +0.7
129,667 - 9745 mRNA_1377 0.58 +0.2
129,680 + 9745 mRNA_1377 0.60 +0.0
129,690 + 9745 mRNA_1377 0.61 -0.3
129,841 - 9745 mRNA_1377 0.83 +0.4
129,858 - 9745 mRNA_1377 0.85 -0.9

Or see this region's nucleotide sequence