Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1405

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9772 and 9773 are separated by 534 nucleotides mRNA_1404: 9772 - KOG2504 Monocarboxylate transporter, at 190,800 to 192,983 9772 mRNA_1405: 9773 - Hypothetical Protein, at 193,518 to 194,541 9773

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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192,570 - 9772 mRNA_1404 0.81 +0.6
192,668 - 9772 mRNA_1404 0.86 +0.0
192,670 + 9772 mRNA_1404 0.86 +0.7
192,685 + 9772 mRNA_1404 0.86 +0.3
192,811 + +0.4
192,943 - -0.3
192,950 + -0.0
192,962 - -0.4
192,962 - +0.7
192,966 + +0.2
193,096 + -0.3
193,099 + +0.3
193,100 + +0.8
193,100 + -0.5
193,101 + -1.2
193,108 + -0.2
193,122 + -0.4
193,123 + -0.2
193,123 + +0.6
193,132 - -0.9
193,263 - +0.7
193,419 + -0.6
193,554 - -0.3
194,444 - -0.2
194,542 + -0.5
194,555 + +0.8
195,108 + -0.3
195,111 - -0.3
195,246 - -0.1
195,263 - -0.0
195,408 + +2.0
195,437 - +1.4
195,446 + +1.3
195,447 + +0.3
195,448 - -0.1
195,454 + -0.3
195,458 - -0.0
195,470 + +0.0
195,471 + +0.1
195,476 + -1.5
195,487 - +0.5
195,487 - +0.9
195,489 - +0.5
195,491 - -0.7
195,497 + -1.0
195,507 + -0.2
195,510 - +0.2
195,512 + +1.3
195,522 - -0.7
195,529 - +1.6
195,535 + +0.4
195,539 + +1.1

Or see this region's nucleotide sequence