Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1409

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9776 and 9777 are separated by 555 nucleotides9777 and 9778 are separated by 133 nucleotides mRNA_1408: 9776 - K02936 RP-L7Ae, RPL7A large subunit ribosomal protein L7Ae, at 201,412 to 202,510 9776 mRNA_1409: 9777 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 203,066 to 203,566 9777 mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203,700 to 204,648 9778

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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203,220 + 9777 mRNA_1409 0.31 -0.2
203,285 + 9777 mRNA_1409 0.44 -0.8
203,366 - 9777 mRNA_1409 0.60 +0.8
203,374 - 9777 mRNA_1409 0.61 +0.9
203,384 - 9777 mRNA_1409 0.63 +0.0
203,414 + 9777 mRNA_1409 0.69 -0.6
203,508 + 9777 mRNA_1409 0.88 -2.0

Or see this region's nucleotide sequence