Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1432

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9799 and 9800 are separated by 982 nucleotides9800 and 9801 are separated by 450 nucleotides mRNA_1431: 9799 - Hypothetical Protein, at 266,080 to 266,508 9799 mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267,491 to 268,796 9800 mRNA_1433: 9801 - K17081 PHB2 prohibitin 2, at 269,247 to 270,588 9801

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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266,501 - -0.8
266,506 + -0.0
266,616 + +0.7
266,621 + +0.9
266,634 + +2.0
266,693 - +0.2
266,759 - -1.5
266,760 - +1.0
266,913 - -0.3
266,919 + +0.8
266,927 - +1.7
266,936 - -1.9
267,050 - -0.1
267,052 - +0.4
267,065 + +0.8
267,091 + +0.8
267,091 + +0.5
267,095 + +0.1
267,095 + +1.4
267,103 + +1.3
267,116 + -0.6
267,241 + +0.7
267,251 + +0.3
267,264 + -0.4
267,267 + +1.4
267,274 - +0.0
267,281 + +0.0
267,282 + -0.3
267,388 - -0.2
268,836 - -0.7
268,886 - +0.1
268,899 - +0.5
269,030 + +0.7
269,049 + +2.0
269,467 - 9801 mRNA_1433 0.16 +1.0
269,629 + 9801 mRNA_1433 0.28 -0.2
269,773 - 9801 mRNA_1433 0.39 +2.1

Or see this region's nucleotide sequence