Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1452

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9819 and 9820 are separated by 479 nucleotides9820 and 9821 are separated by 189 nucleotides mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321,832 to 325,764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326,244 to 328,401 9820 mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328,591 to 330,027 9821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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325,261 - 9819 mRNA_1451 0.87 +1.2
325,279 + 9819 mRNA_1451 0.88 +1.3
325,560 + +1.3
325,681 + +0.5
325,814 + +2.0
325,834 + +0.9
325,848 - -3.0
325,852 + +0.2
325,854 - +0.2
325,862 - +3.3
325,862 - -1.1
325,862 - -0.9
325,863 + +0.1
325,868 - +0.2
325,875 + +0.2
325,880 - -1.1
325,884 + -0.9
325,931 - -0.1
325,942 - +0.1
325,943 + -0.3
325,982 - +0.3
325,993 - -0.4
325,994 + -0.2
325,996 + -0.2
325,999 + +2.0
326,000 + +0.1
326,002 + -0.2
326,003 - +0.2
326,008 + +0.8
326,010 + -0.0
326,144 - +0.1
326,302 + -0.8
327,311 - 9820 mRNA_1452 0.49 -0.5
327,426 - 9820 mRNA_1452 0.55 -0.3
327,461 - 9820 mRNA_1452 0.56 -0.1
328,324 - +1.8
328,516 + +0.4
328,803 + 9821 mRNA_1453 0.15 -0.0
328,811 + 9821 mRNA_1453 0.15 +0.5
328,812 - 9821 mRNA_1453 0.15 +0.3
329,236 + 9821 mRNA_1453 0.45 -0.4

Or see this region's nucleotide sequence