Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1453

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9820 and 9821 are separated by 189 nucleotides9821 and 9822 are separated by 158 nucleotides mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326,244 to 328,401 9820 mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328,591 to 330,027 9821 mRNA_1454: 9822 - K11390 CLYBL citrate lyase subunit beta-like protein, at 330,186 to 331,593 9822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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328,324 - +1.8
328,516 + +0.4
328,803 + 9821 mRNA_1453 0.15 -0.0
328,811 + 9821 mRNA_1453 0.15 +0.5
328,812 - 9821 mRNA_1453 0.15 +0.3
329,236 + 9821 mRNA_1453 0.45 -0.4
329,558 - 9821 mRNA_1453 0.67 +0.7
329,681 - 9821 mRNA_1453 0.76 -0.5
330,128 - +0.7
330,251 - -0.0
330,255 + +1.4
330,263 - +0.9
330,268 + +1.7
330,275 + +0.6
330,707 + 9822 mRNA_1454 0.37 -0.4

Or see this region's nucleotide sequence