Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1464

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9831 and 9832 are separated by 273 nucleotides9832 and 9833 are separated by 281 nucleotides9833 and 9834 are separated by 90 nucleotides mRNA_1463: 9831 - K08850 AURKX aurora kinase, other, at 349,259 to 351,388 9831 mRNA_1464: 9832 - BLAST conidiation protein Con-6, putative [Aspergillus ..., at 351,662 to 352,112 9832 mRNA_1465: 9833 - Hypothetical Protein, at 352,394 to 352,564 9833 mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087 9834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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351,535 - +2.3
351,688 - +1.0
351,907 + 9832 mRNA_1464 0.54 +0.2
352,467 + 9833 mRNA_1465 0.43 +1.6
352,633 + -0.4
352,659 + -0.1
352,660 - -0.9
352,671 - -0.8
352,679 + +0.0
352,814 + 9834 mRNA_1466 0.11 -0.0
352,942 - 9834 mRNA_1466 0.20 +0.7
353,092 - 9834 mRNA_1466 0.30 +2.2
353,093 + 9834 mRNA_1466 0.31 +0.5

Or see this region's nucleotide sequence