Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1511

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9878 and 9879 are separated by 91 nucleotides9879 and 9880 are separated by 219 nucleotides mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476,183 to 478,334 9878 mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478,426 to 481,591 9879 mRNA_1512: 9880 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 481,811 to 485,314 9880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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477,475 + 9878 mRNA_1510 0.60 -0.3
477,778 + 9878 mRNA_1510 0.74 -1.1
478,353 - +0.8
479,950 + 9879 mRNA_1511 0.48 +1.6
480,386 + 9879 mRNA_1511 0.62 -0.2
481,461 - +0.5
481,703 - +0.2
482,238 - 9880 mRNA_1512 0.12 -2.4
482,265 - 9880 mRNA_1512 0.13 +0.9
482,298 + 9880 mRNA_1512 0.14 -0.2
482,584 - 9880 mRNA_1512 0.22 -1.1

Or see this region's nucleotide sequence