Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1545

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9912 and 9913 are separated by 219 nucleotides9913 and 9914 are separated by 485 nucleotides mRNA_1544: 9912 - K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4, at 555,337 to 558,196 9912 mRNA_1545: 9913 - Hypothetical Protein, at 558,416 to 558,832 9913 mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559,318 to 562,481 9914

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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557,460 - 9912 mRNA_1544 0.74 +1.7
557,461 + 9912 mRNA_1544 0.74 -0.3
557,681 - 9912 mRNA_1544 0.82 +2.1
558,268 + +0.2
558,332 - -1.2
558,349 + -0.0
558,350 - +1.6
558,483 + 9913 mRNA_1545 0.16 +0.6
558,509 - 9913 mRNA_1545 0.22 -0.1
558,648 + 9913 mRNA_1545 0.56 -1.1
558,781 + 9913 mRNA_1545 0.88 +0.1
558,928 + +0.3
559,080 + -0.4
559,088 + +0.5
559,144 - -1.7
559,216 + +1.3
559,242 - -0.1
559,347 - -2.8
559,365 - -1.7
559,391 - -1.0
559,674 + 9914 mRNA_1546 0.11 -1.3

Or see this region's nucleotide sequence