Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1555

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9922 and 9923 are separated by 328 nucleotides9923 and 9924 are separated by 84 nucleotides mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583,831 to 584,732 9922 mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305 9924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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584,185 - 9922 mRNA_1554 0.39 +0.1
584,209 + 9922 mRNA_1554 0.42 +0.4
584,760 + +1.4
584,909 - +0.3
584,914 + -0.5
584,974 - +0.3
584,994 - +0.8
584,999 + -0.3
585,004 + -0.2
585,011 + +0.1
585,020 - +0.4
585,021 - -0.4
585,023 + +1.3
585,037 + -0.5
585,164 + +1.5
585,304 + 9923 mRNA_1555 0.13 +0.9
585,317 + 9923 mRNA_1555 0.13 -0.1
585,616 + 9923 mRNA_1555 0.29 +1.5
585,616 + 9923 mRNA_1555 0.29 -0.0
585,737 - 9923 mRNA_1555 0.35 +0.0
586,017 - 9923 mRNA_1555 0.49 +1.1
586,368 + 9923 mRNA_1555 0.68 -0.0
586,858 + +0.2
587,619 + 9924 mRNA_1556 0.44 +1.2
587,660 - 9924 mRNA_1556 0.47 +1.6
587,794 - 9924 mRNA_1556 0.58 -0.5

Or see this region's nucleotide sequence