Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1558

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9925 and 9926 are separated by 263 nucleotides9926 and 9927 are separated by 608 nucleotides mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588,478 to 590,403 9925 mRNA_1558: 9926 - KOG4155 FOG WD40 repeat, at 590,667 to 593,724 9926 mRNA_1559: 9927 - Hypothetical Protein, at 594,333 to 596,246 9927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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589,731 - 9925 mRNA_1557 0.65 -0.4
589,929 - 9925 mRNA_1557 0.75 +1.0
589,988 + 9925 mRNA_1557 0.78 +0.9
590,567 - +0.3
590,568 + +0.2
590,589 + -0.0
590,599 - -0.1
591,854 + 9926 mRNA_1558 0.39 -0.4
592,324 - 9926 mRNA_1558 0.54 +1.3
592,350 + 9926 mRNA_1558 0.55 +0.4
592,861 + 9926 mRNA_1558 0.72 -0.1

Or see this region's nucleotide sequence