Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1569

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9936 and 9937 are separated by 175 nucleotides9937 and 9938 are separated by 191 nucleotides mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615,434 to 616,155 9936 mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616,331 to 617,555 9937 mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617,747 to 619,889 9938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,355 - +2.1
615,387 - -0.0
615,390 + -0.1
615,932 - 9936 mRNA_1568 0.69 -0.7
616,100 + +0.3
616,231 + +0.7
616,244 + -0.9
616,249 + -1.2
616,251 + +3.2
616,950 - 9937 mRNA_1569 0.51 +1.5
618,088 + 9938 mRNA_1570 0.16 -0.5
618,105 + 9938 mRNA_1570 0.17 +1.8
618,195 + 9938 mRNA_1570 0.21 -0.6
618,232 - 9938 mRNA_1570 0.23 +0.2
618,238 + 9938 mRNA_1570 0.23 +1.1
618,516 + 9938 mRNA_1570 0.36 +0.6
618,523 + 9938 mRNA_1570 0.36 -0.4

Or see this region's nucleotide sequence