Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1603

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9970 and 9971 are separated by 492 nucleotides9971 and 9972 are separated by 143 nucleotides mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699,316 to 700,594 9971 mRNA_1604: 9972 - K02209 MCM5, CDC46 DNA replication licensing factor MCM5, at 700,738 to 703,638 9972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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698,368 + 9970 mRNA_1602 0.82 -3.0
698,532 - 9970 mRNA_1602 0.89 -2.2
698,655 + +0.3
698,675 - -2.4
698,681 - -0.6
698,924 - -0.6
698,972 - -0.4
698,973 - +0.2
698,975 - +0.3
698,997 - -0.8
699,272 - -1.1
700,742 + +0.7

Or see this region's nucleotide sequence