Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1624

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9991 and 9992 are separated by 204 nucleotides9992 and 9993 are separated by 295 nucleotides mRNA_1623: 9991 - Hypothetical Protein, at 746,291 to 747,597 9991 mRNA_1624: 9992 - BLAST calcium-transporting ATPase [Pseudozyma hubeiensi..., at 747,802 to 749,738 9992 mRNA_1625: 9993 - Hypothetical Protein, at 750,034 to 750,701 9993

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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747,177 - 9991 mRNA_1623 0.68 -0.1
747,207 - 9991 mRNA_1623 0.70 -0.4
747,476 - -0.2
747,478 - +1.3
747,496 - -1.8
747,625 + -0.0
747,632 - +0.4
747,639 + +1.4
747,644 + -0.7
747,789 + +0.2
747,801 + -1.2
747,804 - -0.3
747,805 - -1.4
747,813 + +0.2
747,815 + +0.7
747,823 - +0.4
748,073 - 9992 mRNA_1624 0.14 +1.0
748,089 + 9992 mRNA_1624 0.15 +0.5
748,090 - 9992 mRNA_1624 0.15 +1.1
748,690 - 9992 mRNA_1624 0.46 -2.0
749,096 - 9992 mRNA_1624 0.67 +0.0
749,756 + +1.2
749,976 - +0.4
750,632 - 9993 mRNA_1625 0.90 -0.1

Or see this region's nucleotide sequence