Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1630

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9997 and 9998 are separated by 470 nucleotides9998 and 9999 are separated by 357 nucleotides mRNA_1629: 9997 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 754,772 to 756,288 9997 mRNA_1630: 9998 - SUPERFAMILY--SSF81383, at 756,759 to 757,602 9998 mRNA_1631: 9999 - BLAST Tyrosine-protein phosphatase non-receptor type 23 [St..., at 757,960 to 758,498 9999

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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755,852 - 9997 mRNA_1629 0.71 +0.3
755,863 + 9997 mRNA_1629 0.72 -0.4
756,390 + +2.1
756,568 - -0.2
756,573 + +0.5
756,985 - 9998 mRNA_1630 0.27 -0.2
757,006 - 9998 mRNA_1630 0.29 +1.0
757,018 - 9998 mRNA_1630 0.31 +0.6
757,266 + 9998 mRNA_1630 0.60 +2.5
757,447 + 9998 mRNA_1630 0.82 -2.5
757,583 + -0.1
757,588 + +0.0
757,721 + +0.1
757,732 + +1.9
757,740 - +0.2
757,741 + +1.7
757,773 + -0.4
757,803 - +0.2
757,811 - +1.1
757,856 + +0.7
757,858 - +0.6
757,865 - +0.4
757,867 + -0.7
757,872 + -0.0
757,880 - +0.1
757,886 + -0.7
757,921 + +0.9
757,993 + +1.5
758,198 + 9999 mRNA_1631 0.44 +0.6
758,206 + 9999 mRNA_1631 0.46 +0.7
758,530 + -0.1
758,574 + -0.5

Or see this region's nucleotide sequence