Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1695

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10062 and 10063 are separated by 632 nucleotides10063 and 10064 are separated by 273 nucleotides mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,848 to 915,614 10062 mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916,247 to 917,394 10063 mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917,668 to 919,209 10064

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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915,260 - 10062 mRNA_1694 0.54 +0.4
915,435 - 10062 mRNA_1694 0.77 -0.2
915,436 + 10062 mRNA_1694 0.77 -1.2
915,436 - 10062 mRNA_1694 0.77 -1.5
915,562 + +1.2
915,842 - +0.2
915,889 - +1.3
916,132 + +0.5
916,152 + +0.1
916,311 + +0.4
916,408 - 10063 mRNA_1695 0.14 +0.8
916,438 - 10063 mRNA_1695 0.17 -0.0
916,579 + 10063 mRNA_1695 0.29 +0.3
916,579 + 10063 mRNA_1695 0.29 +0.4
916,588 - 10063 mRNA_1695 0.30 +2.7
916,691 - 10063 mRNA_1695 0.39 -1.2
916,692 + 10063 mRNA_1695 0.39 -0.8
916,901 + 10063 mRNA_1695 0.57 -0.4
916,979 + 10063 mRNA_1695 0.64 +1.2
917,309 - -0.8
917,316 + +2.6
917,592 - +2.1
917,682 - -0.2
917,725 - +0.3
918,024 + 10064 mRNA_1696 0.23 +1.9
918,129 + 10064 mRNA_1696 0.30 -0.0
918,218 - 10064 mRNA_1696 0.36 +2.1
918,324 - 10064 mRNA_1696 0.43 -2.6

Or see this region's nucleotide sequence