Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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26 + -0.1
27 + -1.2
28 + -0.3
31 + -2.3
31 + -0.2
41 + +0.0
66 + +0.9
72 - +0.3
72 - +0.6
93 + +0.9
104 + +1.6
105 + -0.1
108 + -2.7
120 - -0.6
128 + +1.2
135 - -1.0
136 + +0.2
136 - +0.2
137 - -2.3
137 - -2.1
138 + -0.5
139 + -0.8
141 - -1.1
150 - +0.1
151 - -1.4
155 + +1.3
155 + +2.6
156 + -0.2
158 + -0.7
173 - -1.0
175 + -2.1
180 - -0.1
215 + -0.9
220 - -0.1
234 + +0.3
254 - -0.6
283 + +1.3
304 + +0.5
322 + -0.6
324 + -0.6
427 + +1.0
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 +0.1
482 + 10074 mRNA_1706 0.16 +0.0
493 - 10074 mRNA_1706 0.18 +0.9
647 + 10074 mRNA_1706 0.36 -0.7
683 - 10074 mRNA_1706 0.40 -0.2
809 + 10074 mRNA_1706 0.55 +1.1
842 - 10074 mRNA_1706 0.59 +0.1
844 + 10074 mRNA_1706 0.59 +0.4
848 - 10074 mRNA_1706 0.59 -1.0
902 + 10074 mRNA_1706 0.66 +1.2
949 - 10074 mRNA_1706 0.71 -0.6
949 - 10074 mRNA_1706 0.71 +0.2
950 + 10074 mRNA_1706 0.71 +0.5
974 - 10074 mRNA_1706 0.74 -0.1
1,016 + 10074 mRNA_1706 0.79 +0.5
1,065 + 10074 mRNA_1706 0.85 -1.4
1,118 + +0.4
1,142 + -0.7
1,155 + +0.9
1,272 - -0.0
1,281 + -1.4
1,573 + 10075 mRNA_1707 0.23 +0.2
1,625 + 10075 mRNA_1707 0.27 -0.2
1,625 + 10075 mRNA_1707 0.27 +0.7
1,628 + 10075 mRNA_1707 0.27 -0.6
1,646 + 10075 mRNA_1707 0.28 +0.2
1,649 - 10075 mRNA_1707 0.28 +0.1
1,680 + 10075 mRNA_1707 0.30 -1.0
1,781 + 10075 mRNA_1707 0.36 +0.7
1,926 + 10075 mRNA_1707 0.45 -0.6
1,996 + 10075 mRNA_1707 0.49 -0.2
2,005 - 10075 mRNA_1707 0.50 -1.2
2,010 - 10075 mRNA_1707 0.50 -0.4
2,033 + 10075 mRNA_1707 0.51 -0.4
2,068 + 10075 mRNA_1707 0.53 -1.6
2,076 + 10075 mRNA_1707 0.54 -0.4

Or see this region's nucleotide sequence