Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1735

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10102 and 10103 are separated by 963 nucleotides mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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72,165 + +0.4
72,196 - -1.3
72,213 + -0.8
72,285 - +1.3
72,774 + -0.7
72,827 + +0.1
72,899 - -2.4
76,924 + +0.4
76,936 - +2.8
76,938 - -0.1
76,941 + -1.8
76,952 + +1.2
76,962 + +0.0
77,075 + -0.2
77,091 - -0.1
77,105 + +0.8
77,109 - -0.8
77,111 - -0.4
77,176 - +1.0
77,221 - +0.5
77,224 - -2.1
77,234 + +1.0
77,241 + +0.6
77,242 + +1.2
77,251 + -0.9
77,251 + +2.3
77,256 + +1.8
77,260 - -0.7
77,261 + -0.2
77,262 + -0.9
77,262 - +1.5
77,291 + +1.9
77,294 - -1.5
77,295 - -0.8
77,324 + +0.4
77,334 - +1.7
77,339 - +0.8
77,345 - -0.8
77,350 - +2.6
77,350 + +0.8
77,351 + -0.7
77,353 + -1.4
77,360 + -0.5
77,373 - -0.1
77,374 - -2.7
77,386 + -2.2
77,394 - -0.2
77,396 + +0.7
77,399 - -0.3
77,400 + -0.3
77,400 + +0.3
77,407 + +0.5
77,412 - -0.5
77,421 + +0.2
77,422 + +0.3
77,425 + +0.3
77,427 + +0.0
77,427 + -0.1
77,434 + +1.1
77,717 + +1.0
77,722 + +2.6

Or see this region's nucleotide sequence