Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1787

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10154 and 10155 are separated by 414 nucleotides10155 and 10156 are separated by 168 nucleotides mRNA_1786: 10154 - K04078 groES, HSPE1 chaperonin GroES, at 206,965 to 207,485 10154 mRNA_1787: 10155 - HMMPfam-Tctex-1 family-PF03645, at 207,900 to 208,690 10155 mRNA_1788: 10156 - K16368 DGK1 diacylglycerol kinase (CTP), at 208,859 to 210,446 10156

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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207,747 - -0.5
208,042 - 10155 mRNA_1787 0.18 +0.4
208,176 - 10155 mRNA_1787 0.35 +2.4
208,349 - 10155 mRNA_1787 0.57 +0.1
208,476 - 10155 mRNA_1787 0.73 +0.8
208,780 + +1.7
208,781 - +0.3
208,788 - -1.3
208,794 - +0.0
208,799 - -0.9
208,808 + -0.6
208,929 - +0.6
208,956 - -0.7
209,078 + 10156 mRNA_1788 0.14 +0.3
209,128 - 10156 mRNA_1788 0.17 +0.3
209,232 - 10156 mRNA_1788 0.23 +2.2
209,245 + 10156 mRNA_1788 0.24 +0.5
209,313 + 10156 mRNA_1788 0.29 +1.6
209,527 + 10156 mRNA_1788 0.42 -1.7
209,563 - 10156 mRNA_1788 0.44 -0.4

Or see this region's nucleotide sequence