Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1837

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10204 and 10205 are separated by 495 nucleotides10205 and 10206 are separated by 433 nucleotides mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495 10204 mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971 10205 mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627 10206

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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331,610 + +1.5
331,748 - -1.7
331,855 + +0.2
331,862 - -0.9
331,868 - +0.4
331,878 + +0.2
331,903 + +0.3
331,988 - -1.3
332,007 - -0.7
332,013 - -0.4
332,014 - -0.6
332,014 + -0.0
332,014 + -1.1
332,014 - -0.9
332,015 + -0.2
332,039 + -0.8
332,055 + +0.7
332,174 - +2.2
332,315 + -0.8
332,343 + -1.5
332,475 - 10205 mRNA_1837 0.12 +0.1
332,785 + 10205 mRNA_1837 0.20 +1.1
332,788 + 10205 mRNA_1837 0.20 -0.7
334,071 - 10205 mRNA_1837 0.52 +1.0
334,090 + 10205 mRNA_1837 0.53 -0.3
334,096 + 10205 mRNA_1837 0.53 +0.6
334,309 + 10205 mRNA_1837 0.58 +0.5
334,589 + 10205 mRNA_1837 0.65 -0.6
334,665 + 10205 mRNA_1837 0.67 -0.4
334,819 - 10205 mRNA_1837 0.71 -1.9
335,576 - -3.1
335,583 + -3.1
335,714 + -2.1
335,879 - +0.9
336,115 + +1.5
336,144 + -0.2
336,153 + +0.8
336,183 - -0.1
336,314 - +1.1
336,324 - +1.8
336,332 + -0.3
336,472 - -2.9

Or see this region's nucleotide sequence