Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1882

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10249 and 10250 are separated by 679 nucleotides10250 and 10251 are separated by 323 nucleotides mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426,689 to 428,081 10249 mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428,761 to 429,844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430,168 to 431,962 10251

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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428,209 + +0.3
428,296 + +0.6
428,428 - +0.2
428,460 + -0.3
428,600 - -0.9
428,609 + -2.5
428,740 - +1.1
430,062 + -0.8
430,062 - -0.0
430,063 - +1.3
430,068 - -0.8
430,069 + -1.4
430,072 + -1.4
430,138 - +0.5
430,206 - -0.3
430,213 - +0.6
430,218 + -0.3
430,635 - 10251 mRNA_1883 0.26 -0.2
430,649 + 10251 mRNA_1883 0.27 +1.3
430,830 - 10251 mRNA_1883 0.37 +1.0

Or see this region's nucleotide sequence