Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1948

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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579,452 - -0.0
579,452 - +0.5
579,482 + -0.6
579,539 - -0.3
579,593 + -0.6
579,609 + +0.7
579,661 + +0.2
579,704 - -0.8
579,717 - -0.2
579,729 - +0.2
579,729 - -0.4
579,735 - -1.4
579,742 - -1.9
579,746 - -0.7
579,755 - +1.5
579,780 - -0.2
579,782 + +0.5
579,783 + -0.4
579,797 + -1.4
579,816 + +0.0
579,830 + +0.0
579,849 - -0.2
579,868 - +1.7
579,870 - +1.1
579,882 - +0.1
579,887 + -0.4
579,887 + +0.1
579,890 - -0.2
579,899 + +0.5
579,900 + -0.3
579,906 + +1.4
579,912 + +2.3
579,976 - -0.1
579,990 - -0.1
579,990 + -1.1
579,990 + +1.3
579,991 - -1.0
579,991 - -0.3
579,991 - +0.2
580,006 - +2.2
580,010 - +0.0
580,011 + -0.4
580,012 + -1.7
580,014 - +0.2
580,015 - -0.2
580,020 + +1.5
580,035 - +1.6
580,039 + +0.5
580,040 + -1.8
580,042 - +2.1
580,051 - -1.5
580,179 - -0.2
580,180 - +0.6
580,185 - -0.7
580,185 + -0.6
580,195 - -0.6
580,197 - -0.7
580,199 - -1.4
580,204 + -0.1
580,210 + -0.1
580,224 - +0.8
580,332 + +0.4
580,358 - +1.2
580,920 - 10316 mRNA_1948 0.21 +1.2
580,972 + 10316 mRNA_1948 0.23 +0.5
581,211 - 10316 mRNA_1948 0.33 -1.8
581,300 - 10316 mRNA_1948 0.36 +0.3
581,357 + 10316 mRNA_1948 0.39 +0.2
581,363 - 10316 mRNA_1948 0.39 +0.1
581,399 + 10316 mRNA_1948 0.40 +0.5
581,519 + 10316 mRNA_1948 0.45 +0.2
581,751 - 10316 mRNA_1948 0.55 -0.8
581,783 - 10316 mRNA_1948 0.56 -0.4
581,890 - 10316 mRNA_1948 0.60 +0.0
581,960 + 10316 mRNA_1948 0.63 -1.1
582,339 + 10316 mRNA_1948 0.79 +2.1
582,858 + +0.7
582,866 + -0.2
582,871 - -1.1
582,882 + -1.5
583,075 + +0.4
583,127 - +0.2
583,402 + -1.3
583,847 + 10317 mRNA_1949 0.22 -3.0

Or see this region's nucleotide sequence