Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2098

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10465 and 10466 are separated by 414 nucleotides10466 and 10467 are separated by 429 nucleotides mRNA_2097: 10465 - K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase, at 61,470 to 63,350 10465 mRNA_2098: 10466 - Hypothetical Protein, at 63,765 to 64,899 10466 mRNA_2099: 10467 - HMMPfam-PWWP domain-PF00855,SUPERFAMILY--SSF63748, at 65,329 to 67,842 10467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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63,060 + 10465 mRNA_2097 0.85 -0.6
63,318 + +0.9
63,600 + -0.7
63,613 + -0.1
63,642 - -0.7
63,717 - -0.2
63,804 + +0.2
63,889 - 10466 mRNA_2098 0.11 +0.8
63,907 + 10466 mRNA_2098 0.13 -0.2
64,107 + 10466 mRNA_2098 0.30 -0.3
64,464 - 10466 mRNA_2098 0.62 +1.1
64,467 - 10466 mRNA_2098 0.62 -0.7
64,518 - 10466 mRNA_2098 0.66 +1.9
64,544 + 10466 mRNA_2098 0.69 -0.3
64,714 + 10466 mRNA_2098 0.84 -0.5
64,852 - +0.9
64,893 + -0.8
65,255 + -0.3
65,327 + -0.1
65,402 + +0.4
65,503 + +1.3
65,560 + -0.0
65,660 + 10467 mRNA_2099 0.13 +1.3
65,736 + 10467 mRNA_2099 0.16 -0.2
65,739 - 10467 mRNA_2099 0.16 -3.1
65,837 - 10467 mRNA_2099 0.20 +0.5

Or see this region's nucleotide sequence