Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2105

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10472 and 10473 are separated by 579 nucleotides10473 and 10474 are separated by 326 nucleotides mRNA_2104: 10472 - KOG0101 Molecular chaperones HSP70/HSC70, HSP70 superfamily, at 81,364 to 84,462 10472 mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85,042 to 86,447 10473 mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86,774 to 93,150 10474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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84,198 + +2.0
84,324 + +0.8
84,337 - +0.6
84,393 - +0.5
84,680 + -1.2
85,054 - -2.1
85,227 + 10473 mRNA_2105 0.13 +0.5
85,553 - 10473 mRNA_2105 0.36 +0.6
85,612 - 10473 mRNA_2105 0.41 +0.6
85,645 - 10473 mRNA_2105 0.43 +1.2
86,084 - 10473 mRNA_2105 0.74 -1.0
86,133 - 10473 mRNA_2105 0.78 +0.1
86,249 - 10473 mRNA_2105 0.86 +1.7
86,386 + -0.2
86,489 - +0.4
86,530 + +0.2
86,581 + +1.2
86,654 - +0.1
86,694 - -0.0
86,735 + +0.3
86,795 - +0.5
86,812 - +1.1
86,981 - -0.9
87,006 + +1.5
87,077 + +1.2
87,117 + +0.3
87,301 + -0.4
87,327 + +1.4
87,419 - 10474 mRNA_2106 0.10 +1.9
87,432 - 10474 mRNA_2106 0.10 -0.3
87,435 + 10474 mRNA_2106 0.10 +4.2

Or see this region's nucleotide sequence