Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2128

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10495 and 10496 are separated by 469 nucleotides10496 and 10497 are separated by 170 nucleotides mRNA_2127: 10495 - BLAST putative lipase ATG15 [Grifola frondosa], at 133,530 to 135,409 10495 mRNA_2128: 10496 - Hypothetical Protein, at 135,879 to 136,766 10496 mRNA_2129: 10497 - K17741 GRE2 NADPH-dependent methylglyoxal reductase, at 136,937 to 138,468 10497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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134,912 + 10495 mRNA_2127 0.74 +2.1
135,150 - 10495 mRNA_2127 0.86 +1.0
135,156 - 10495 mRNA_2127 0.86 -0.8
135,755 - -2.3
135,934 - +0.2
136,482 - 10496 mRNA_2128 0.68 -0.1
136,566 + 10496 mRNA_2128 0.77 +0.5
136,609 + 10496 mRNA_2128 0.82 +0.5
136,721 - -1.1
136,739 - -1.0
136,783 - -0.7
136,923 + +0.4
137,034 - -0.9
137,035 + -1.8
137,059 - +0.1
137,252 + 10497 mRNA_2129 0.21 -1.2
137,252 + 10497 mRNA_2129 0.21 -1.3
137,381 + 10497 mRNA_2129 0.29 +0.1
137,628 - 10497 mRNA_2129 0.45 +1.2
137,667 + 10497 mRNA_2129 0.48 -2.2
137,671 + 10497 mRNA_2129 0.48 +0.2

Or see this region's nucleotide sequence