Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2144

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10511 and 10512 are separated by 289 nucleotides10512 and 10513 are separated by 476 nucleotides mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180,912 to 181,824 10511 mRNA_2144: 10512 - Hypothetical Protein, at 182,114 to 183,256 10512 mRNA_2145: 10513 - HMMPfam-Protein of unknown function DUF89-PF01937,SUPERFAMILY--SSF111321, at 183,733 to 185,513 10513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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181,178 - 10511 mRNA_2143 0.29 +0.5
181,179 - 10511 mRNA_2143 0.29 -0.3
181,185 + 10511 mRNA_2143 0.30 +0.2
181,197 - 10511 mRNA_2143 0.31 -1.0
181,215 - 10511 mRNA_2143 0.33 -1.5
181,254 - 10511 mRNA_2143 0.37 -0.4
181,309 + 10511 mRNA_2143 0.43 -1.3
181,315 + 10511 mRNA_2143 0.44 +0.6
181,323 + 10511 mRNA_2143 0.45 +1.8
181,332 - 10511 mRNA_2143 0.46 -0.4
181,394 - 10511 mRNA_2143 0.53 +0.3
181,587 - 10511 mRNA_2143 0.74 +1.4
181,617 + 10511 mRNA_2143 0.77 -0.2
181,696 + 10511 mRNA_2143 0.86 +1.4
182,048 - -0.5
182,070 - -1.5
182,077 + -1.7
182,090 - +0.2
182,129 - -0.1
182,285 - 10512 mRNA_2144 0.15 +1.2
182,316 + 10512 mRNA_2144 0.18 +0.4
182,396 - 10512 mRNA_2144 0.25 -1.7
182,405 - 10512 mRNA_2144 0.25 +0.5
182,500 - 10512 mRNA_2144 0.34 -1.6
182,665 + 10512 mRNA_2144 0.48 +1.5
182,665 + 10512 mRNA_2144 0.48 +0.8
182,665 + 10512 mRNA_2144 0.48 +0.7
182,710 + 10512 mRNA_2144 0.52 -2.8
182,847 + 10512 mRNA_2144 0.64 +0.3
182,850 - 10512 mRNA_2144 0.64 -0.3
182,851 - 10512 mRNA_2144 0.64 -0.4
183,008 + 10512 mRNA_2144 0.78 -0.1
183,220 - +0.3
183,220 + +1.5
183,308 + -1.0
183,311 - +0.2
183,312 + -0.9
183,315 - -0.6
183,407 - +0.5
183,500 - -2.3
183,565 - +0.1
183,582 - +0.1
183,701 - -0.5
183,741 - -1.2
183,743 + +0.1
183,757 - +0.1
183,806 + -0.2
183,809 - +1.7
183,815 + -0.0
183,904 - -3.5
183,970 + 10513 mRNA_2145 0.13 -0.6
183,972 - 10513 mRNA_2145 0.13 -2.0
184,009 + 10513 mRNA_2145 0.15 +1.5
184,015 - 10513 mRNA_2145 0.16 +0.2
184,027 + 10513 mRNA_2145 0.17 -0.4
184,074 - 10513 mRNA_2145 0.19 -1.6
184,140 + 10513 mRNA_2145 0.23 +0.0
184,146 + 10513 mRNA_2145 0.23 +0.9
184,192 + 10513 mRNA_2145 0.26 -0.8
184,254 + 10513 mRNA_2145 0.29 +0.4

Or see this region's nucleotide sequence