Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2152

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10519 and 10520 are separated by 113 nucleotides10520 and 10521 are separated by 120 nucleotides mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192,914 to 199,163 10519 mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199,277 to 200,467 10520 mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200,588 to 202,509 10521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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198,918 + +1.0
199,186 + +1.5
199,189 - -0.0
199,296 + -1.1
199,620 + 10520 mRNA_2152 0.29 +1.7
199,625 + 10520 mRNA_2152 0.29 +1.0
199,780 + 10520 mRNA_2152 0.42 -0.1
199,793 - 10520 mRNA_2152 0.43 -2.1
199,914 - 10520 mRNA_2152 0.53 -0.7
200,040 - 10520 mRNA_2152 0.64 +0.6
200,047 + 10520 mRNA_2152 0.65 -0.3
200,049 + 10520 mRNA_2152 0.65 -1.6
200,223 - 10520 mRNA_2152 0.79 +0.6
200,494 - +0.2
200,502 - -0.0
200,502 - +0.4

Or see this region's nucleotide sequence