Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2322

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10689 and 10690 are separated by 168 nucleotides mRNA_2321: 10689 - K14807 DDX51, DBP6 ATP-dependent RNA helicase DDX51/DBP6, at 604,206 to 606,574 10689 mRNA_2322: 10690 - Hypothetical Protein, at 606,743 to 609,720 10690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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606,669 + -1.0
607,269 + 10690 mRNA_2322 0.18 +1.0
607,390 - 10690 mRNA_2322 0.22 -0.3
607,497 - 10690 mRNA_2322 0.25 +1.5
607,957 - 10690 mRNA_2322 0.41 -1.9
607,978 + 10690 mRNA_2322 0.41 -1.6
608,215 - 10690 mRNA_2322 0.49 +0.1
608,541 + 10690 mRNA_2322 0.60 -2.4
608,600 - 10690 mRNA_2322 0.62 +0.5
608,660 - 10690 mRNA_2322 0.64 +1.0
608,685 - 10690 mRNA_2322 0.65 -0.2
608,997 - 10690 mRNA_2322 0.76 -0.7
609,180 - 10690 mRNA_2322 0.82 +1.1
609,309 - 10690 mRNA_2322 0.86 +0.6
609,315 + 10690 mRNA_2322 0.86 +0.1
609,603 - -0.3
609,651 - +1.7
609,729 - -0.1
609,750 + -3.1
609,763 + +0.9
609,763 + -0.3
609,770 + +2.2
609,860 - +0.8
609,874 - +1.4
609,890 - -0.0
609,897 - +0.5
609,899 + -1.9
609,916 + -1.1
609,918 + -0.2
610,012 + +1.8
610,026 + +0.6
610,036 - +0.1
610,042 - +0.5
610,043 + +2.2
610,045 - +0.3
610,045 - +1.6
610,046 + +0.0
610,075 + -1.6
610,087 + +0.3
610,087 - -1.8
610,091 + +0.1
610,095 + -0.2
610,096 + -1.2
610,097 - +0.7
610,100 + -0.4
610,103 - +1.4
610,104 - +0.5
610,106 - -0.9
610,107 + +0.5
610,111 - -0.3
610,114 + -0.2
610,114 - +1.8
610,117 - -1.1
610,120 + +0.4
610,120 - -0.4
610,122 + -0.1
610,126 + -1.0
610,129 - -1.5
610,129 + -0.3
610,129 + +0.9
610,129 + +0.9
610,135 + -0.6
610,141 - +0.7
610,144 + -0.4
610,146 + -1.8
610,149 + -0.3
610,149 + -0.4
610,153 + -2.0
610,154 - -1.8
610,169 - +0.9
610,181 - -0.8
610,182 - +0.6
610,185 - +1.1
610,187 - -0.7
610,188 - +0.3
610,190 - -0.7
610,190 - -1.1
610,194 - -0.4
610,194 + +0.4
610,208 - +0.8
610,216 + +0.6
610,245 - -1.3
610,257 + +0.4
610,301 - -1.6
610,311 + +2.0
610,315 - +1.3
610,323 - -0.8
610,356 + +0.4
610,365 - +0.3
610,385 - +0.8
610,415 - +1.6
610,439 - +1.1
610,460 - +1.0
610,466 - -1.2
610,467 - +1.6
610,477 - +0.7
610,477 - +2.2
610,489 + +0.0
610,506 + -1.0
610,518 - -0.0
610,537 - -0.3
610,558 - -0.8
610,589 - -1.3
610,606 + +2.0
610,610 - +1.9
610,650 + -0.7

Or see this region's nucleotide sequence