Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2351

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10719 and 10720 are separated by 805 nucleotides mRNA_2351: 10719 - Hypothetical Protein, at 687,521 to 688,021 10719 mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561 10720

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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686,906 + +0.8
686,915 + +0.4
687,278 - -0.2
687,316 - -0.5
687,435 + +2.5
687,594 + 10719 mRNA_2351 0.15 -0.7
687,602 + 10719 mRNA_2351 0.16 +0.5
687,613 + 10719 mRNA_2351 0.18 -0.0
687,624 + 10719 mRNA_2351 0.21 -1.6
687,736 + 10719 mRNA_2351 0.43 +3.4
687,745 - 10719 mRNA_2351 0.45 +2.3
687,745 - 10719 mRNA_2351 0.45 +1.1
688,190 - -0.6
688,342 - +0.8
688,474 + +0.3
688,600 - +0.5
688,781 - -0.1

Or see this region's nucleotide sequence