Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2375

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10742 and 10743 are separated by 241 nucleotides10743 and 10744 are separated by 259 nucleotides mRNA_2374: 10742 - K12897 TRA2 transformer-2 protein, at 746,572 to 748,318 10742 mRNA_2375: 10743 - Hypothetical Protein, at 748,560 to 749,428 10743 mRNA_2376: 10744 - Hypothetical Protein, at 749,688 to 751,493 10744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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748,354 - -1.1
748,361 - -0.2
748,368 - +0.2
748,534 + -3.0
748,800 - 10743 mRNA_2375 0.28 -0.2
748,810 - 10743 mRNA_2375 0.29 -0.5
748,816 - 10743 mRNA_2375 0.29 -1.3
748,967 - 10743 mRNA_2375 0.47 +1.5
748,981 + 10743 mRNA_2375 0.48 +1.1
749,409 + -0.0
749,538 - -0.3
749,705 + -0.4
750,001 - 10744 mRNA_2376 0.17 +0.0
750,109 + 10744 mRNA_2376 0.23 +0.0
750,166 + 10744 mRNA_2376 0.26 +1.9
750,272 + 10744 mRNA_2376 0.32 +0.5

Or see this region's nucleotide sequence