Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2395

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10762 and 10763 are separated by 248 nucleotides10763 and 10764 are separated by 108 nucleotides mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15,133 to 16,619 10762 mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16,868 to 18,999 10763 mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19,108 to 21,174 10764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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16,094 + 10762 mRNA_2394 0.65 -0.7
16,110 - 10762 mRNA_2394 0.66 -1.5
16,264 + 10762 mRNA_2394 0.76 +1.5
16,274 - 10762 mRNA_2394 0.77 +1.2
16,317 + 10762 mRNA_2394 0.80 -0.1
16,323 + 10762 mRNA_2394 0.80 -1.3
16,329 - 10762 mRNA_2394 0.80 -1.5
16,375 + 10762 mRNA_2394 0.84 -0.4
16,439 - 10762 mRNA_2394 0.88 -0.8
16,469 + 10762 mRNA_2394 0.90 +1.5
16,561 + +0.7
16,563 - -0.4
16,580 + -0.4
16,625 + -1.2
16,696 - +0.4
16,724 + +0.8
16,850 + +0.1
16,869 - -1.3
16,870 + -1.0
16,874 + +0.2
16,911 - -0.5
16,914 - +0.3
16,919 + -0.8
17,000 - +1.6
17,036 + -0.2
17,198 + 10763 mRNA_2395 0.15 +0.2
17,273 + 10763 mRNA_2395 0.19 -0.4
17,431 - 10763 mRNA_2395 0.26 +1.1
17,446 - 10763 mRNA_2395 0.27 +0.4
17,449 - 10763 mRNA_2395 0.27 -0.5
17,455 + 10763 mRNA_2395 0.28 -1.1
17,652 + 10763 mRNA_2395 0.37 +1.1
17,981 + 10763 mRNA_2395 0.52 -1.1
18,062 - 10763 mRNA_2395 0.56 +0.6
18,209 - 10763 mRNA_2395 0.63 -0.2
18,268 - 10763 mRNA_2395 0.66 +1.0
18,279 - 10763 mRNA_2395 0.66 +0.3
18,408 - 10763 mRNA_2395 0.72 +0.5
18,411 + 10763 mRNA_2395 0.72 -1.4
18,500 + 10763 mRNA_2395 0.77 -1.1
18,525 - 10763 mRNA_2395 0.78 -0.5
18,585 - 10763 mRNA_2395 0.81 -0.3
18,633 + 10763 mRNA_2395 0.83 -0.5
18,640 - 10763 mRNA_2395 0.83 +0.2
18,689 - 10763 mRNA_2395 0.85 +0.8
18,772 - 10763 mRNA_2395 0.89 -2.1
18,798 + +1.4
19,076 + -1.8
19,087 - +2.6
19,228 + +0.5
19,244 - +0.3
19,352 + 10764 mRNA_2396 0.12 +1.1
19,513 - 10764 mRNA_2396 0.20 +0.4
19,518 + 10764 mRNA_2396 0.20 +0.4
19,528 + 10764 mRNA_2396 0.20 -1.0
19,571 - 10764 mRNA_2396 0.22 -0.4
19,682 + 10764 mRNA_2396 0.28 +0.3
19,813 - 10764 mRNA_2396 0.34 +1.3

Or see this region's nucleotide sequence