Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2405

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10773 and 10774 are separated by 709 nucleotides mRNA_2405: 10773 - KOG1910 Uncharacterized conserved protein, at 41,181 to 51,337 10773 mRNA_2406: 10774 - KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22, at 52,047 to 52,986 10774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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40,281 - +0.3
40,456 + -0.2
40,475 + -0.2
40,614 - +1.2
40,741 - -1.7
40,754 - +0.9
40,765 + -1.2
40,767 - -1.1
40,782 - +0.4
40,786 + -0.2
40,807 - +0.3
40,813 + +2.2
40,815 + -0.6
40,883 - -0.1
40,913 - -0.7
40,962 + +0.2
41,050 + +1.0
41,087 - -0.9
41,090 + +0.6
41,108 + -0.3
41,128 + +0.6
41,210 - +1.0
41,248 - +0.9
41,395 + -0.9
41,408 + -0.3
41,704 + +0.5
41,854 - +1.0
41,983 + -1.1
42,008 - +0.9
42,286 - 10773 mRNA_2405 0.11 -0.8
42,295 - 10773 mRNA_2405 0.11 +0.7
42,437 - 10773 mRNA_2405 0.12 +0.8
42,560 - 10773 mRNA_2405 0.14 +0.9
42,745 + 10773 mRNA_2405 0.15 +0.5
42,757 - 10773 mRNA_2405 0.16 +1.0
43,054 - 10773 mRNA_2405 0.18 +0.0
43,129 - 10773 mRNA_2405 0.19 +0.7
43,135 + 10773 mRNA_2405 0.19 +0.9
43,435 - 10773 mRNA_2405 0.22 +1.9
43,439 + 10773 mRNA_2405 0.22 +3.5
43,465 - 10773 mRNA_2405 0.22 -0.5
43,548 - 10773 mRNA_2405 0.23 +0.0
43,639 - 10773 mRNA_2405 0.24 -1.6
43,698 - 10773 mRNA_2405 0.25 -0.7
43,737 - 10773 mRNA_2405 0.25 +0.9
43,770 - 10773 mRNA_2405 0.25 +0.8
43,851 + 10773 mRNA_2405 0.26 +0.1
43,891 + 10773 mRNA_2405 0.27 +1.3
43,891 + 10773 mRNA_2405 0.27 -1.4
44,284 + 10773 mRNA_2405 0.31 +2.3
44,293 + 10773 mRNA_2405 0.31 -0.2
44,312 - 10773 mRNA_2405 0.31 -0.6
44,318 - 10773 mRNA_2405 0.31 +0.5
44,327 - 10773 mRNA_2405 0.31 +0.4
44,343 + 10773 mRNA_2405 0.31 -2.1
44,417 - 10773 mRNA_2405 0.32 -0.9
44,471 + 10773 mRNA_2405 0.32 -1.1
44,648 - 10773 mRNA_2405 0.34 +2.6
44,748 - 10773 mRNA_2405 0.35 +0.5
44,887 + 10773 mRNA_2405 0.36 +1.8
44,954 + 10773 mRNA_2405 0.37 +0.2
44,993 - 10773 mRNA_2405 0.38 -0.2
45,052 - 10773 mRNA_2405 0.38 +1.7
45,067 - 10773 mRNA_2405 0.38 +2.0
45,159 - 10773 mRNA_2405 0.39 +0.6
45,232 - 10773 mRNA_2405 0.40 +0.3
45,243 + 10773 mRNA_2405 0.40 -0.2
45,280 - 10773 mRNA_2405 0.40 +0.5
45,676 - 10773 mRNA_2405 0.44 +1.2
45,774 - 10773 mRNA_2405 0.45 +0.4
45,789 + 10773 mRNA_2405 0.45 -0.2
45,879 - 10773 mRNA_2405 0.46 +1.6
45,942 + 10773 mRNA_2405 0.47 -1.4
45,960 - 10773 mRNA_2405 0.47 +0.2
46,009 - 10773 mRNA_2405 0.48 +0.6
46,074 + 10773 mRNA_2405 0.48 -0.7
46,082 - 10773 mRNA_2405 0.48 -0.9
46,308 - 10773 mRNA_2405 0.50 +0.4
46,315 - 10773 mRNA_2405 0.51 -0.2
46,656 + 10773 mRNA_2405 0.54 +1.3
46,792 - 10773 mRNA_2405 0.55 +2.3
46,795 + 10773 mRNA_2405 0.55 -0.8
46,805 + 10773 mRNA_2405 0.55 -0.5
46,816 + 10773 mRNA_2405 0.55 -1.0
47,100 + 10773 mRNA_2405 0.58 -0.0
47,186 + 10773 mRNA_2405 0.59 +0.1
47,196 + 10773 mRNA_2405 0.59 +0.5
47,324 - 10773 mRNA_2405 0.60 +0.1
47,338 + 10773 mRNA_2405 0.61 -0.0
47,450 - 10773 mRNA_2405 0.62 +1.4
47,486 - 10773 mRNA_2405 0.62 -0.2
47,631 - 10773 mRNA_2405 0.64 +0.5
47,639 - 10773 mRNA_2405 0.64 -0.2
47,655 + 10773 mRNA_2405 0.64 +1.0
47,895 - 10773 mRNA_2405 0.66 +0.4
47,898 + 10773 mRNA_2405 0.66 +1.3
47,949 - 10773 mRNA_2405 0.67 -0.2
47,999 + 10773 mRNA_2405 0.67 +0.0
48,026 + 10773 mRNA_2405 0.67 +0.1
48,153 - 10773 mRNA_2405 0.69 +0.4
48,314 + 10773 mRNA_2405 0.70 +1.3
48,834 - 10773 mRNA_2405 0.75 +0.6
48,843 + 10773 mRNA_2405 0.75 +1.4
48,963 + 10773 mRNA_2405 0.77 +0.8
49,153 - 10773 mRNA_2405 0.78 +0.9
49,253 - 10773 mRNA_2405 0.79 -0.9
49,273 + 10773 mRNA_2405 0.80 +0.9
49,729 + 10773 mRNA_2405 0.84 +1.9
49,931 - 10773 mRNA_2405 0.86 +0.7
49,936 + 10773 mRNA_2405 0.86 -0.8
50,062 + 10773 mRNA_2405 0.87 -1.1
50,185 + 10773 mRNA_2405 0.89 +0.2
50,284 - 10773 mRNA_2405 0.90 -0.5
50,528 - -0.8
50,537 + +0.5
50,697 - +1.4
50,708 - +0.0
50,716 + +0.1
51,127 + -1.4
51,127 + -1.2
51,270 + +0.1
51,387 - -0.4
51,393 - -0.1
51,397 + +3.2
51,419 - +0.9
51,421 - -1.6
51,531 - +0.9
51,564 + -0.3
51,567 + +0.1
51,712 - -0.0
51,933 - +2.5
51,976 + +0.2
52,120 - +0.8

Or see this region's nucleotide sequence