Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2422

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10789 and 10790 are separated by 140 nucleotides10790 and 10791 are separated by 222 nucleotides mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82,479 to 84,495 10789 mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84,636 to 85,865 10790 mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86,088 to 89,055 10791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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83,695 + 10789 mRNA_2421 0.60 -0.4
84,122 - 10789 mRNA_2421 0.81 +0.2
84,122 - 10789 mRNA_2421 0.81 +1.3
84,129 + 10789 mRNA_2421 0.82 -0.1
84,129 + 10789 mRNA_2421 0.82 +0.9
84,375 - +1.8
84,376 - -0.4
84,835 + 10790 mRNA_2422 0.16 -0.3
84,838 - 10790 mRNA_2422 0.16 +1.2
84,839 + 10790 mRNA_2422 0.17 +1.6
84,848 - 10790 mRNA_2422 0.17 -1.4
84,872 - 10790 mRNA_2422 0.19 +0.1
84,894 - 10790 mRNA_2422 0.21 -0.6
85,177 - 10790 mRNA_2422 0.44 +1.8
85,193 + 10790 mRNA_2422 0.45 +0.6
85,195 - 10790 mRNA_2422 0.45 -0.9
85,601 - 10790 mRNA_2422 0.78 +0.1
85,909 - -1.7
86,028 + +0.5
86,072 - +0.6
86,164 - -1.8
86,236 - -0.9
86,239 - -1.7
86,338 - -1.4
86,378 + -0.2
86,519 - 10791 mRNA_2423 0.15 +0.2
86,622 + 10791 mRNA_2423 0.18 +0.3
86,657 + 10791 mRNA_2423 0.19 +1.5
86,751 - 10791 mRNA_2423 0.22 -0.1

Or see this region's nucleotide sequence