Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2466

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10833 and 10834 are separated by 450 nucleotides mRNA_2465: 10833 - K09291 TPR, MLP1, MLP2 nucleoprotein TPR, at 206,394 to 209,572 10833 mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249 10834

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
209,625 + +1.2
209,626 - +2.3
209,634 - +0.2
209,646 - -1.3
209,654 + -2.2
209,655 - -0.3
209,696 - +0.7
209,697 + +0.7
209,734 + -0.2
210,049 + +0.9
210,106 - +1.2
210,146 + +1.1
210,257 - +1.2
210,373 - +0.5
210,407 + +1.9
210,417 + +1.1
210,554 - 10834 mRNA_2466 0.10 +1.4
210,578 + 10834 mRNA_2466 0.11 -0.8
210,670 + 10834 mRNA_2466 0.12 -1.1
211,024 - 10834 mRNA_2466 0.19 -2.5
211,168 - 10834 mRNA_2466 0.22 +2.1
211,252 + 10834 mRNA_2466 0.24 -0.4
211,425 + 10834 mRNA_2466 0.27 +2.1
211,478 - 10834 mRNA_2466 0.28 -1.5
211,696 + 10834 mRNA_2466 0.32 -1.0
212,009 + 10834 mRNA_2466 0.38 +0.7
212,146 - 10834 mRNA_2466 0.41 -2.2
212,195 + 10834 mRNA_2466 0.42 -1.2
212,229 - 10834 mRNA_2466 0.42 -1.3
212,539 - 10834 mRNA_2466 0.48 +0.5
212,620 + 10834 mRNA_2466 0.50 -0.5
212,843 - 10834 mRNA_2466 0.54 +1.6
212,857 + 10834 mRNA_2466 0.54 -0.1
212,910 - 10834 mRNA_2466 0.55 -0.6
212,911 + 10834 mRNA_2466 0.55 -1.4
212,912 - 10834 mRNA_2466 0.55 +0.1
212,913 - 10834 mRNA_2466 0.55 +2.4
213,019 + 10834 mRNA_2466 0.57 +0.1
213,074 + 10834 mRNA_2466 0.58 -0.4
213,482 + 10834 mRNA_2466 0.66 +1.9
213,484 + 10834 mRNA_2466 0.66 +1.0
213,648 + 10834 mRNA_2466 0.69 +0.7
213,899 + 10834 mRNA_2466 0.74 +0.8
214,195 + 10834 mRNA_2466 0.80 +1.7
214,334 + 10834 mRNA_2466 0.82 -0.6
214,479 + 10834 mRNA_2466 0.85 -0.1
214,496 - 10834 mRNA_2466 0.86 -0.4
214,896 + +0.3
214,913 + -1.5
215,195 - +1.8
215,204 - +0.8
215,220 + -0.1
215,223 + +0.6
215,245 - +0.8
215,260 + -0.4
215,348 - -0.3
215,375 + +1.9
215,507 - +0.0
215,511 - -1.6
215,542 - +1.3
215,638 - -0.1
215,662 + -0.1
215,668 - -0.1
216,081 + +0.4
216,117 - -0.7
216,141 - -1.2
216,168 + -0.5

Or see this region's nucleotide sequence