Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2469

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10836 and 10837 are separated by 274 nucleotides10837 and 10838 are separated by 406 nucleotides mRNA_2468: 10836 - HMMPfam-Protein of unknown function (DUF3605)-PF12239, at 219,439 to 220,603 10836 mRNA_2469: 10837 - K12479 VPS45 vacuolar protein sorting-associated protein 45, at 220,878 to 223,726 10837 mRNA_2470: 10838 - K06659 CLB3_4 G2/mitotic-specific cyclin 3/4, at 224,133 to 225,151 10838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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219,946 - 10836 mRNA_2468 0.44 -0.6
220,084 + 10836 mRNA_2468 0.55 -0.0
220,375 - 10836 mRNA_2468 0.80 +1.1
220,391 - 10836 mRNA_2468 0.82 +0.7
220,498 - -0.1
220,539 + -0.3
220,608 - +0.8
220,650 - -0.8
220,651 + -0.2
220,823 + -1.1
220,995 - +0.3
223,533 + -0.2
223,535 - +2.4
223,667 + -1.1
223,696 + -2.7
223,846 - +0.5
223,966 - +0.8

Or see this region's nucleotide sequence