Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2475

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10842 and 10843 are separated by 321 nucleotides mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234,258 to 235,956 10842 mRNA_2475: 10843 - BLAST CAMK protein kinase [Microbotryum lychnidis-dioicae p..., at 236,278 to 238,719 10843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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235,296 - 10842 mRNA_2474 0.61 +1.0
235,303 - 10842 mRNA_2474 0.62 -0.2
235,346 + 10842 mRNA_2474 0.64 +0.5
235,725 - 10842 mRNA_2474 0.86 +3.2
235,738 - 10842 mRNA_2474 0.87 +1.6
236,183 - -0.4
236,291 + -1.3
236,410 - +0.2
236,472 - -1.6
236,473 + -1.1
236,488 + +1.5
236,843 - 10843 mRNA_2475 0.23 -0.9
237,037 - 10843 mRNA_2475 0.31 -0.6
237,445 + 10843 mRNA_2475 0.48 -2.0
237,697 - 10843 mRNA_2475 0.58 -0.1
238,079 - 10843 mRNA_2475 0.74 -2.3
238,132 + 10843 mRNA_2475 0.76 -0.6
238,338 + 10843 mRNA_2475 0.84 +1.2
238,589 - -0.4
238,589 - -0.8
238,647 + -0.1
238,648 - +0.4
238,948 - -1.4
238,993 + -1.3
239,035 - +0.1
239,047 - +0.1
239,300 + -0.1

Or see this region's nucleotide sequence