Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2516

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10883 and 10884 are separated by 254 nucleotides mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313 10883 mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334,568 to 336,151 10884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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334,252 + +1.4
334,321 + -0.1
335,112 - 10884 mRNA_2516 0.34 -0.1
335,337 - 10884 mRNA_2516 0.49 +0.5
335,497 + 10884 mRNA_2516 0.59 +0.3
335,554 + 10884 mRNA_2516 0.62 +0.2
335,822 + 10884 mRNA_2516 0.79 +0.5
335,913 - 10884 mRNA_2516 0.85 -0.2
336,087 - -0.3
336,115 + +1.4
336,208 + -1.4
336,226 - -1.4
336,233 - -0.1
336,236 + +0.1
336,239 - +0.0
336,240 - +1.0
336,243 + -2.0
336,337 + +0.1
336,338 - -0.4
336,339 - +1.6
336,340 + +0.1
336,341 - +0.0
336,349 + +0.7
336,375 + -2.4
336,376 + -0.6
336,379 + +0.3
336,382 + -0.5
336,405 + +0.6
336,410 + +2.0
336,414 + -0.4
336,414 + -0.0
336,429 + -0.6
336,432 - -0.9
336,445 - +2.2
336,453 + -1.0
336,456 + -2.5
336,480 + -0.4
336,482 + -1.5
336,519 + +0.8
336,533 - +1.1
336,541 + +0.0
336,544 - -0.7
336,559 + +2.4
336,564 - -0.4
336,564 - +0.1
336,575 + -0.4
336,587 + +0.0
336,593 - -0.2
336,597 + +0.0
336,604 + +1.0
336,614 + +0.3
336,616 + +2.0
336,621 - +0.4
336,644 - -3.1
336,651 + -2.0
336,657 - -1.2
336,693 + +1.1
336,724 - +0.4
336,728 - -1.4
336,732 - -0.4
336,747 + +0.1
336,849 - -2.1
336,852 + +0.1
336,874 - -0.6
336,885 + +0.6
336,951 - -0.1
337,005 + +2.2
337,109 + -0.4
337,132 - -0.3

Or see this region's nucleotide sequence