Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2517

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10885 and 10886 are separated by 144 nucleotides mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877 10885 mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494 10886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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336,208 + -1.4
336,226 - -1.4
336,233 - -0.1
336,236 + +0.1
336,239 - +0.0
336,240 - +1.0
336,243 + -2.0
336,337 + +0.1
336,338 - -0.4
336,339 - +1.6
336,340 + +0.1
336,341 - +0.0
336,349 + +0.7
336,375 + -2.4
336,376 + -0.6
336,379 + +0.3
336,382 + -0.5
336,405 + +0.6
336,410 + +2.0
336,414 + -0.4
336,414 + -0.0
336,429 + -0.6
336,432 - -0.9
336,445 - +2.2
336,453 + -1.0
336,456 + -2.5
336,480 + -0.4
336,482 + -1.5
336,519 + +0.8
336,533 - +1.1
336,541 + +0.0
336,544 - -0.7
336,559 + +2.4
336,564 - -0.4
336,564 - +0.1
336,575 + -0.4
336,587 + +0.0
336,593 - -0.2
336,597 + +0.0
336,604 + +1.0
336,614 + +0.3
336,616 + +2.0
336,621 - +0.4
336,644 - -3.1
336,651 + -2.0
336,657 - -1.2
336,693 + +1.1
336,724 - +0.4
336,728 - -1.4
336,732 - -0.4
336,747 + +0.1
336,849 - -2.1
336,852 + +0.1
336,874 - -0.6
336,885 + +0.6
336,951 - -0.1
337,005 + +2.2
337,109 + -0.4
337,132 - -0.3
337,249 - -1.3
337,297 - +1.1
337,310 + +1.0
337,406 + +0.3
338,594 - 10885 mRNA_2517 0.53 -0.3
338,610 - 10885 mRNA_2517 0.53 +0.8
338,725 - 10885 mRNA_2517 0.57 -0.7
338,745 + 10885 mRNA_2517 0.58 +3.2
338,870 + 10885 mRNA_2517 0.63 -0.8
339,151 - 10885 mRNA_2517 0.73 +2.0
339,157 - 10885 mRNA_2517 0.73 -0.2
339,170 - 10885 mRNA_2517 0.74 +0.6
339,177 + 10885 mRNA_2517 0.74 +0.9
339,185 + 10885 mRNA_2517 0.74 -0.9
339,218 - 10885 mRNA_2517 0.76 +1.5
339,222 + 10885 mRNA_2517 0.76 +1.3
339,224 - 10885 mRNA_2517 0.76 +0.7
339,230 + 10885 mRNA_2517 0.76 -0.3
339,230 - 10885 mRNA_2517 0.76 +2.5
339,234 + 10885 mRNA_2517 0.76 -1.1
339,239 - 10885 mRNA_2517 0.76 +1.2
339,242 - 10885 mRNA_2517 0.77 -1.0
339,243 + 10885 mRNA_2517 0.77 +0.5
339,252 - 10885 mRNA_2517 0.77 -1.0
339,279 + 10885 mRNA_2517 0.78 +1.4
339,367 - 10885 mRNA_2517 0.81 -0.4
339,368 - 10885 mRNA_2517 0.81 +1.3
339,381 - 10885 mRNA_2517 0.82 +1.2
339,491 + 10885 mRNA_2517 0.86 -0.1
339,798 - +2.6
339,909 - +1.1
339,938 + +0.6
339,939 + -0.0
339,942 - +0.9
339,946 - -1.0
339,947 + +0.1
339,951 + -0.8
339,951 - -0.8
339,953 + -1.6
339,959 + -0.9
339,963 + -1.9
340,104 - +1.8
340,112 + -0.4
340,147 + +0.5
340,244 + 10886 mRNA_2518 0.15 +0.1
340,259 + 10886 mRNA_2518 0.16 +0.0
340,408 + 10886 mRNA_2518 0.26 +0.4
340,537 + 10886 mRNA_2518 0.35 +0.9
340,822 - 10886 mRNA_2518 0.54 +0.2

Or see this region's nucleotide sequence