Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2533

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10900 and 10901 are separated by 247 nucleotides10901 and 10902 are separated by 381 nucleotides mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375,571 to 377,208 10900 mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384,523 to 387,549 10902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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376,774 + 10900 mRNA_2532 0.73 -0.4
376,809 + 10900 mRNA_2532 0.76 -1.2
377,103 + +1.1
377,194 - -1.1
377,214 + -0.4
377,248 - -0.5
377,275 - +1.1
377,475 - -0.9
377,549 - -3.4
377,569 + +1.4
377,841 - -0.6
377,960 - +0.0
378,173 + 10901 mRNA_2533 0.11 +1.1
378,387 + 10901 mRNA_2533 0.14 -1.3
378,910 + 10901 mRNA_2533 0.22 +1.2
379,323 + 10901 mRNA_2533 0.28 +0.6
379,554 + 10901 mRNA_2533 0.31 -1.2
379,886 + 10901 mRNA_2533 0.36 -0.6
380,269 + 10901 mRNA_2533 0.42 +1.3
380,382 + 10901 mRNA_2533 0.44 +1.0
380,886 + 10901 mRNA_2533 0.51 +1.6
381,339 - 10901 mRNA_2533 0.58 +1.9
381,400 - 10901 mRNA_2533 0.59 +0.3
381,516 + 10901 mRNA_2533 0.61 -0.1
381,786 - 10901 mRNA_2533 0.65 +0.2
382,344 + 10901 mRNA_2533 0.73 +2.1
382,569 - 10901 mRNA_2533 0.76 +1.0
382,622 + 10901 mRNA_2533 0.77 -2.1
382,795 - 10901 mRNA_2533 0.80 +0.2
383,041 - 10901 mRNA_2533 0.84 -1.8
383,205 + 10901 mRNA_2533 0.86 -1.3
383,234 - 10901 mRNA_2533 0.86 +1.1
383,639 - +1.3
383,775 + +0.3
383,796 + -0.4
384,097 - +1.2
384,218 - +1.5
384,234 - +0.8
384,238 + +1.0
384,340 - -0.4
384,379 - -0.4
384,383 - -0.9
384,392 + +0.2
384,441 + -0.2
384,530 - -1.3
384,549 + +0.1
384,865 - 10902 mRNA_2534 0.11 +0.8
385,004 + 10902 mRNA_2534 0.16 +0.4
385,093 - 10902 mRNA_2534 0.19 -0.9

Or see this region's nucleotide sequence