Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2543

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10910 and 10911 are separated by 273 nucleotides10911 and 10912 are separated by 363 nucleotides mRNA_2542: 10910 - Hypothetical Protein, at 401,521 to 403,165 10910 mRNA_2543: 10911 - Hypothetical Protein, at 403,439 to 404,457 10911 mRNA_2544: 10912 - K00046 idnO gluconate 5-dehydrogenase, at 404,821 to 406,181 10912

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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402,792 - 10910 mRNA_2542 0.77 -1.1
402,813 - 10910 mRNA_2542 0.79 +0.0
402,827 + 10910 mRNA_2542 0.79 +0.3
402,941 + 10910 mRNA_2542 0.86 -1.2
403,062 - -0.6
403,063 + +0.7
403,069 + +1.3
403,374 + -1.8
403,396 + +1.9
403,419 + +1.0
403,633 + 10911 mRNA_2543 0.19 +2.7
403,640 + 10911 mRNA_2543 0.20 -0.1
404,000 - 10911 mRNA_2543 0.55 +0.0
404,264 - 10911 mRNA_2543 0.81 -0.0
404,443 + -0.7
404,564 + -2.6
404,849 + -0.8
405,047 - 10912 mRNA_2544 0.17 +0.0
405,090 + 10912 mRNA_2544 0.20 -3.3
405,146 - 10912 mRNA_2544 0.24 -1.6
405,295 - 10912 mRNA_2544 0.35 +0.8
405,343 - 10912 mRNA_2544 0.38 -0.8

Or see this region's nucleotide sequence